PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000821959
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 354aa    MW: 38446.1 Da    PI: 7.5969
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000821959genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.73.2e-3464121359
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     v+YkeClkNhAa+lGgha+DGCgEfmps+ ++ +++++lkCaACgCHRnFHRr++e+
  MDP0000821959  64 VVTYKECLKNHAAALGGHALDGCGEFMPSPAANlADPTSLKCAACGCHRNFHRRDPED 121
                    589***************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.5E-2865119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.2E-3166118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20767118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1567117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.5E-29202270IPR009057Homeodomain-like
SuperFamilySSF466898.51E-18202270IPR009057Homeodomain-like
TIGRFAMsTIGR015656.7E-25209266IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDITPSITTT TNNTASTKSP EADSETPTRI QQPLKPLSFS NGVLKRHNPT HHLHHQNIPI  60
TPVVVTYKEC LKNHAAALGG HALDGCGEFM PSPAANLADP TSLKCAACGC HRNFHRRDPE  120
DPVQPNTPAA TTHVIEYQPH HRHHPPPPTH PGNRSPSSAS PPPISSSYYP SAPHMLLALS  180
TAHENALAGA NNNNAVAMPQ VMSRSPNARK RFRTKFTQDQ KEKMYQFAER VGWKMQKRDE  240
EIVREFCNEA GVEKGVLKVW MHNNKNTFSK RDVLNGGAGG RAGSLSRPSF LLEHSHHHNN  300
GTNGNGTNGN GNNNDDDEEE DDDQNDNKNG VPNPNHHYQG ADGGGNNGSS SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-222102671875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.100070.0bud| fruit| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379353.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF02e-77ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLM5WSW11e-102M5WSW1_PRUPE; Uncharacterized protein
STRINGVIT_14s0108g00750.t012e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-63homeobox protein 34